- Shahi SK*, Ghimire S, Lehman P, and Mangalam AK*. (2022). Obesity induced gut dysbiosis contribute to disease severity in the animal model of multiple sclerosis. Frontier in Immunology 13:966417. PMID: 36164343, *Co-corresponding author
- Shahi SK, Ali S, Jaime CM, Guseva NV, Mangalam AK. (2021). HLA class II polymorphisms modulate gut microbiota and experimental autoimmune encephalomyelitis phenotype. Immunohorizons 5(8):627-646. PMID: 34380664
- Shahi SK, Freedman SN, Murra AC, Zarei K, Sompallae R, Gibson-Corley KN, Karandikar NJ, Murray JA, Mangalam AK. (2019). Prevotella histicola, a human gut commensal, is as potent as COPAXONE in an animal model of multiple sclerosis. Frontiers in Immunology 10, 421557. PMID: 30984162.
- Mangalam AK, Shahi SK, Luckey D, Karau M, Marietta E, Luo N, Choung SR Ju J, Sompallae R, Gibson-Corler K, Patel R, Rodriguez M, Chella D, Taneja V, and Murray J. (2017). Human gut-derived commensal bacteria suppress central nervous system inflammatory and demyelinating disease. Cell Reports 20(6):1269-1277. PMID: 28793252.
- Shahi SK, Freedman SN, and Mangalam AK (2017). Gut Microbiome in Multiple Sclerosis: The Players Involved and the Roles They Play. Gut Microbes 8(6) : 607-615. PMID: 28696139.
- Sugiura A, Andrejeva G, Voss K, Heintzman DR, Xu X, Madden MZ, Ye X, Beier KL, Chowdhury NU, Wolf MM, Young AC, Greenwood DL, Sewell AE, Shahi SK, Freedman SN, Cameron AM, Foerch P, Bourne T, Garcia-Canaveras JC, Karijolich J, Newcomb DC, Mangalam AK, Rabinowitz JD, Rathmell JC. (2022). MTHFD2 is a metabolic checkpoint controlling effector and regulatory T cell fate and function. Immunity 55(1):65-81.e9. PMID: 34767747.
- Ghimire S, Lehman PC, Aguilar Meza LS, Shahi SK, Hoang J, Olalde H, Paullus M, Cherwin C, Wang K, Gill C, Cho T, & Mangalam AK. (2025). Specific microbial ratio in the gut microbiome is associated with multiple sclerosis. Proceedings of the National Academy of Sciences-PNAS 122 (10) e2413953122. PMID: 40030030.
- Jensen SN, Cady NM, Shahi SK, Peterson SR, Gupta A, Gibson-Corley KN, Mangalam AK. (2021). Isoflavone diet ameliorates experimental autoimmune encephalomyelitis through modulation of gut bacteria depleted in patients with multiple sclerosis. Science Advances 7(28):eabd4595. PMID: 34244137
- Shahi SK, Freedman SN, Murra AC, Gibson-Corley KN, Karandikar NJ, Tang N, Gua H, Zhang J, Murray JA, Mangalam AK. (2020). Human commensal Prevotella histicola ameliorates disease as effectively as interferon-beta in the experimental autoimmune encephalomyelitis. Frontiers in Immunology, 11:578648. PMID: 33362764.
- Shahi SK, Freedman SN, Dahl R, Karandikar NJ, Mangalam AK. (2019). Scoring disease in an animal model of multiple sclerosis using a novel infrared-based automated activity-monitoring system. Scientific Reports 9(1):19194. PMID: 31844134.